xengsort - SERP Analysis

https://gitlab.com/genomeinformatics/xengsort

https://almob.biomedcentral.com/articles/10.1186/s13015-021-00181-w

https://docs.seqera.io/multiqc/modules/xengsort

https://www.biorxiv.org/content/10.1101/2020.05.14.095604v2.full.pdf

https://hpc.nih.gov/apps/xengsort.html

https://anaconda.org/bioconda/xengsort

https://github.com/ewels/MultiQC/issues/2165

https://gitlab.com/genomeinformatics/xengsort/-/tree/master/xengsort

https://www.rahmannlab.de/lehre/alsa21/xengsort.pdf

https://bioconda.github.io/recipes/xengsort/README.html

https://f1000research.com/posters/13-1277

https://pubmed.ncbi.nlm.nih.gov/33810805/

https://www.rahmannlab.de/news/xengsort.html

https://almob.biomedcentral.com/articles/10.1186/s13015-021-00181-w/tables/1

https://www.youtube.com/watch?v=Ywy2BT0oIqc

https://www.researchgate.net/figure/Classification-results-of-different-tools-XenofilteR-xenome-xengsort-and-partially_fig4_350590211

https://www.biorxiv.org/content/10.1101/2020.05.14.095604v1.full-text

https://www.reddit.com/r/bioinformatics/comments/1f1dwgo/patientderived_xenograft_rnaseq_methods_of/

https://www.nature.com/articles/s41698-025-00902-z

https://www.researchgate.net/figure/Tools-for-xenograft-sorting-and-read-filtering-with-key-properties-See-text-for_tbl1_349414610

https://docs.seqera.io/multiqc/modules/xenome

https://cgc.sbgenomics.com/public/apps/jelena_randjelovic/pdxnet-wfs-2024-commit/rna-expression-estimation-v1-cwl1-2

https://d1hiluowqo0t4b.cloudfront.net/posters/docs/f1000research-685671.pdf

https://anaconda.org/bioconda/repo/files?sort=_name&label=all&access=all&sort_order=desc&type=conda&page=3

https://gccri.uthscsa.edu/2025/04/17/npj-precision-oncology-benchmarking-mouse-contamination-removing-protocols-in-patient-derived-xenografts-genomic-profiling-zheng-wang-kurmasheva-houghton-lai-chen-labs/

https://genomecenter.tu-dresden.de/infohub/bioinformatics/output-bfx-mapping_counting.html

https://academic.oup.com/bioinformatics/article-pdf/40/11/btae608/60789944/btae608.pdf

https://www.cell.com/cms/10.1016/j.crmeth.2024.100759/attachment/4c0c7de9-37c1-48c0-95ff-bb36541d70ab/mmc1.pdf

https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.4

https://scispace.com/pdf/fast-lightweight-accurate-xenograft-sorting-3gjbt8r84o.pdf