run nextflow from git clone - SERP Analysis

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https://www.nextflow.io/docs/latest/sharing.html

https://www.nextflow.io/docs/latest/git.html

https://github.com/nextflow-io/nextflow/discussions/2995

https://poojalande5.medium.com/running-a-nextflow-pipeline-e671079f143b

https://community.seqera.io/t/running-a-nextflow-pipeline-from-a-git-repository-setting-defaults/507/3

https://github.com/nextflow-io/nextflow/issues/597

https://vibbits-nextflow-workshop.readthedocs.io/en/latest/nextflow/running_pipeline.html

https://training.nextflow.io/2.1/envsetup/02_local/

https://andersenlab.org/dry-guide/2022-03-09/quest-nextflow/

https://nf-co.re/docs/usage/getting_started/installation

https://groups.google.com/g/nextflow/c/_1uB5yETvBQ

https://docs.cerit.io/en/docs/workflows/nextflow

https://www.biostars.org/p/9531520/

https://www.nextflow.io/docs/latest/cli.html

https://documentation.dnanexus.com/user/running-apps-and-workflows/running-nextflow-pipelines

https://bioinfo-guidelines.readthedocs.io/en/latest/nextflow/customize.html

https://stackoverflow.com/questions/77062946/i-am-really-struggling-to-run-this-nextflow-pipeline

https://andersenlab.org/dry-guide/latest/quest/quest-nextflow/

https://nextflow-io.github.io/elixir-workshop-21/docs/second.html

https://www.nextflow.io/docs/latest/developer/index.html

https://biocorecrg.github.io/CoursesCRG_Containers_Nextflow_May_2021/share-nextflow-pipelines-and-good-practices.html

https://www.nextflow.io/docs/latest/reference/cli.html

https://epi2me.nanoporetech.com/epi2me-docs/wfquickstart/

https://cloud.google.com/life-sciences/docs/tutorials/nextflow

https://nf-co.re/docs/usage/getting_started/introduction

https://isc22.hpcworkshops.com/04-container-parallelcluster/04-launch-nextflow.html

https://help.connected.illumina.com/illumina-connected-analytics/tutorials/nextflow/nextflow_pipeline_liftovers

https://gitbio.ens-lyon.fr/rhoury/nextflow/-/tree/v0.2.7?ref_type=tags

https://latch.bio/nextflow

https://stianlagstad.no/2024/10/efficient-management-of-large-test-data-for-nextflow-pipelines-using-dvc-and-custom-github-actions-runners/

https://ccv.brown.edu/blog/nextflow/

https://docs.quantms.org/en/latest/usage.html

https://hpc.nih.gov/apps/nextflow.html

https://stackoverflow.com/questions/63093708/how-to-run-python-script-in-nextflow

https://glama.ai/mcp/servers/%40adamrtalbot/mcp-nextflow

https://fig.io/manual/nextflow/run

https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/pages/nextflow_usage/

https://docs.omics.ai/products/analysis/integrations/nextflow

https://bioinformaticsworkbook.org/dataAnalysis/nextflow/01_introductionToNextFlow.html

https://www.biostars.org/p/9566215/

https://csc-guide-preview.2.rahtiapp.fi/origin/toil-tykky-hello-world/support/tutorials/nextflow-puhti/

http://shires.me/posts/google-batch/

https://gitbio.ens-lyon.fr/xgrand/ChIPster/-/blob/be83f64ff390b8ed52b4874e4080fdacdbac8303/doc/getting_started.md

https://cloud.google.com/batch/docs/nextflow

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https://www.depts.ttu.edu/hpcc/userguides/Nextflow_Job_Guide.pdf

https://docs.dockstore.org/en/stable/getting-started/getting-started-with-nextflow.html

https://academy.dnanexus.com/buildingworkflows/nf/importingandrunningnfcore

https://www.nextflow.io/docs/stable/developer/index.html

https://learn.flowdeploy.com/tutorial-basics/develop

https://docs.quantms.org/en/latest/_sources/usage.rst.txt

https://help.ica.illumina.com/tutorials/nextflow/nextflow_pipeline_liftovers

https://www.meglab.org/amrplusplus/v2/installation/

https://sc21.hpcworkshops.com/04-container-parallelcluster/04-launch-nextflow.html

http://docs.gcc.rug.nl/fender/nextflow/

https://fig.io/manual/nextflow/pull

https://www.reddit.com/r/bioinformatics/comments/ofjing/why_does_it_feels_impossible_to_set_up_github/

https://pipelines.tol.sanger.ac.uk/genomeassembly/dev/usage

https://epi2me.nanoporetech.com/nextflow-on-windows/

https://ifb-elixirfr.gitlab.io/cluster/doc/software/nextflow/

https://bioinformaticsworkbook.org/dataAnalysis/nextflow/02_creatingAworkflow.html

https://hackmd.io/%40diegomics/HkxCrNn9q?utm_source=preview-mode&utm_medium=rec

https://learn.gencore.bio.nyu.edu/nextflow/

https://docs.viral.ai/analysis/integrations/nextflow/

https://docs.stracquadaniolab.org/projects-management/project-workflow/

https://docs.csc.fi/support/tutorials/nextflow-tutorial/

https://developer.harness.io/docs/continuous-integration/use-ci/codebase-configuration/git-clone-step/

https://en.wikipedia.org/wiki/Nextflow

https://www.nextflow.io/docs/stable/cli.html

https://www.nextflow.io/docs/stable/reference/cli.html

https://developers.redhat.com/learning/learn:openshift:using-openshift-pipelines/resource/resources:clone-github-repository-and-create-pipeline

https://www.nextflow.io/docs/latest/reference/config.html

https://www.reddit.com/r/biology/comments/1l8uvvn/help_classifying_onion_cells_for_a_machine/

https://lescailab.unipv.it/guides/eos_guide/use_nextflow.html

https://www.nextflow.io/docs/edge/reference/cli.html

https://dsri.maastrichtuniversity.nl/docs/workflows-nextflow/

https://training.nextflow.io/2.0.1/nf_customize/02_nf-core/

https://github-wiki-see.page/m/CDCgov/phoenix/wiki/Dependencies-and-Install

https://training.nextflow.io/2.1.3/envsetup/01_setup/

https://www.nextflow.io/docs/latest/module.html

https://www.nextflow.io/docs/latest/container.html

https://www.nextflow.io/docs/latest/your-first-script.html

https://training.nextflow.io/2.0/envsetup/02_local/

https://www.nextflow.io/docs/latest/process.html

https://www.nextflow.io/docs/edge/developer/index.html

https://training.nextflow.io/2.1.5/hello_nextflow/05_hello_containers/

https://training.nextflow.io/2.0/envsetup/01_setup/

https://www.nextflow.io/docs/edge/container.html

https://www.nextflow.io/docs/latest/developer-env.html

https://nextflow.io/docs/latest/developer/nextflow.scm.html

https://training.nextflow.io/2.1/basic_training/rnaseq_pipeline/

https://training.nextflow.io/2.1/basic_training/containers/

https://www.nextflow.io/docs/latest/aws.html

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https://training.nextflow.io/

https://training.nextflow.io/2.1/basic_training/seqera_platform/

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https://training.nextflow.io/2.0/hands_on/03_setup/