deseq2 - SERP Analysis

https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html

https://bioconductor.org/packages/DESeq2

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0550-8

https://www.bioconductor.org/packages/devel/bioc/html/DESeq2.html

https://en.wikipedia.org/wiki/DESeq2

https://lashlock.github.io/compbio/R_presentation.html

https://github.com/thelovelab/DESeq2

https://www.youtube.com/watch?v=NGbZmlGLG5w&vl=en

https://hbctraining.github.io/DGE_workshop/lessons/04_DGE_DESeq2_analysis.html

https://github.com/owkin/PyDESeq2

https://rtguides.it.tufts.edu/bio/tutorials/de-seq2-in-r-ood.html

https://www.biosparked.com/course/deseq2-tutorial

https://rnabio.org/module-03-expression/0003/03/03/Differential_Expression-DESeq2/

https://www.geneious.com/tutorials/expression-analysis-deseq2

https://pluto.bio/resources/Learning%20Series/deseq2-an-overview-of-popular-rna-seq-analysis-package

https://genviz.org/module-04-expression/0004/02/01/DifferentialExpression/

http://bioconductor.riken.jp/packages/3.9/bioc/html/DESeq2.html

https://www.reddit.com/r/bioinformatics/comments/12uslzm/deseq2_edger_challenges/

https://usegalaxy.eu/?tool_id=deseq2

https://med.und.edu/research/genomics-core/_files/docs/deseq2-handout.pdf

https://learn.gencore.bio.nyu.edu/rna-seq-analysis/deseq-2/

https://www.rdocumentation.org/packages/DESeq2/versions/1.12.3/topics/DESeq

https://help.galaxyproject.org/t/differential-gene-expression-deseq2-error/10851

https://rdrr.io/bioc/DESeq2/

https://chipster.csc.fi/manual/deseq2.html

https://datascience.arizona.edu/events/beginners-guide-rna-seq-deseq2

https://inmoose.readthedocs.io/en/v0.6.0/deseq.html

https://anaconda.org/bioconda/bioconductor-deseq2

https://support.illumina.com/help/BS_App_RNASeq_DE_OLH_1000000071939/Content/Source/Informatics/DESeq2.htm

https://www.biostars.org/p/9542883/

https://bioinformaticshome.com/tools/rna-seq/descriptions/DESeq2.html

https://www.reddit.com/r/bioinformatics/comments/tf59r1/deseq2_black_box/

https://pubmed.ncbi.nlm.nih.gov/27280887/

https://medium.com/%40mennahtullahmabrouk/intro-analyzing-rna-seq-data-with-deseq2-b435b0080ce4

https://help.pluto.bio/en/articles/5232553-what-is-deseq2

https://help.galaxyproject.org/t/deseq2-how-does-it-work/5855

https://www.youtube.com/watch?v=UFB993xufUU

https://www.seqanswers.com/forum/applications-forums/rna-sequencing/26274-deseq-v-deseq2

http://bioconductor.jp/packages/2.14/bioc/vignettes/DESeq2/inst/doc/DESeq2.pdf

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-10-r106

https://www.bioconductor.org/packages/release/bioc/manuals/DESeq2/man/DESeq2.pdf

https://bioinformaticshome.com/db/tool/DESeq2

https://www.rdocumentation.org/packages/DESeq2/versions/1.12.3/topics/DESeq2-package

https://www.youtube.com/watch?v=X6p3E-QTcUc

https://bioinformaticsonline.com/blog/view/44803/basics-of-deseq2-differential-expression-made-simple

https://www.sthda.com/english/wiki/rna-seq-differential-expression-work-flow-using-deseq2

https://www.youtube.com/watch?v=kOlMcZujHHA

https://master.bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html

https://docs.tinybio.cloud/docs/overview-of-deseq2

https://www.youtube.com/watch?v=kOlMcZujHHA&pp=0gcJCdgAo7VqN5tD

https://genboree.org/theCommons/projects/exrna-tools-may2014/wiki/DESeq2

https://www.andersvercelli.com/master/packages/2.12/bioc/vignettes/DESeq2/inst/doc/DESeq2.pdf

https://ashleyschwartz.com/posts/2023/05/deseq2-tutorial

https://www.youtube.com/watch?v=JfYo1eXSbtg

https://olvtools.com/en/documents/deseq2

https://liorpachter.wordpress.com/tag/deseq2/

https://www.youtube.com/watch?v=Mhw5a-anLJ4

https://introtogenomics.readthedocs.io/en/latest/2021.11.11.DeseqTutorial.html

https://www.denbi.de/blog-archive/1591-utilizing-deseq2-for-differential-gene-expression-analysis

https://bioinformaticsworkbook.org/tutorials/DESeq2.html

https://stackoverflow.com/questions/58843915/deseq2-code-help-for-analysing-differential-gene-expression-between-disease-and

https://bioconductor.statistik.tu-dortmund.de/packages/2.14/bioc/vignettes/DESeq2/inst/doc/beginner.pdf

https://m.youtube.com/watch?v=0b24mpzM_5M&pp=ygUFI3JkZWc%3D

https://www.youtube.com/watch?v=OzNzO8qwwp0

https://www.youtube.com/watch?v=OPt51qc5YJ8

https://www.nature.com/articles/s41598-025-03640-1

https://bioconductor.org/packages/devel/bioc/vignettes/Glimma/inst/doc/DESeq2.html

https://www.youtube.com/watch?v=Ul-9s8YOOSk

https://app.terra.bio/

https://www.youtube.com/watch?v=KJDnk6Glbgg

https://www.mdpi.com/2227-9067/12/6/734

https://www.biorxiv.org/content/10.1101/2025.06.10.656785v1

https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2025.1555441/full

https://link.springer.com/article/10.1186/s10086-025-02205-0

https://www.youtube.com/watch?v=2lqkx4XVits

https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70246

https://www.bioconductor.org/packages//2.12/bioc/html/DESeq2.html

https://usegalaxy.org/

https://blog.csdn.net/H20230717/article/details/148566001

https://www.nature.com/articles/s41598-025-02287-2

https://www.numberanalytics.com/blog/deep-dive-next-generation-sequencing-bioinformatics

https://www.science.org/doi/10.1126/sciadv.adq2742

https://www.youtube.com/watch?v=8_PQCsDzmUY

https://aacrjournals.org/cancerrescommun/article/5/6/921/762850/Targeting-the-Glucose-Insulin-Link-in-Head-and

https://www.mdpi.com/2079-7737/14/6/676

https://onlinelibrary.wiley.com/doi/10.1002/ece3.71508?af=R

https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2025.1601982/full

https://www.youtube.com/watch?v=ZjMfiPLuwN4

https://www.ebiotrade.com/newsf/2025-6/20250611112628405.htm

https://wap.sciencenet.cn/blog-3581686-1489498.html?mobile=1

https://www.science.org/doi/abs/10.1126/sciadv.ads2689

https://www.dovepress.com/xuebijing-injection-alleviates-sepsis-induced-acute-lung-injury-by-inh-peer-reviewed-fulltext-article-JIR

https://www.youtube.com/watch?v=VuqI9mwkLxo

https://www.preprints.org/manuscript/202506.0669/v1

https://www.ebiotrade.com/newsf/2025-6/20250612052145869.htm

https://www.researchgate.net/publication/347664885_Direct_and_Indirect_Regulators_of_Epithelial-Mesenchymal_Transition-Mediated_Immunosuppression_in_Breast_Carcinomas

https://www.youtube.com/watch?v=8it5wWp_ja0

https://emploi.cnrs.fr/Offres/CDD/UMR5284-FABLEG-001/Default.aspx

https://www.preprints.org/manuscript/202506.0651/v1