cpptraj rotation - SERP Analysis

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http://archive.ambermd.org/202012/0317.html

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https://amberhub.chpc.utah.edu/amber-hub/start-here-rmsd-analysis-in-cpptraj/

https://github.com/Amber-MD/cpptraj/issues/27

https://amberhub.chpc.utah.edu/cpptraj/action-commands/

https://raw.githubusercontent.com/Amber-MD/cpptraj/master/doc/CpptrajManual.pdf

https://amberhub.chpc.utah.edu/trajout/

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https://amberhub.chpc.utah.edu/introduction-to-principal-component-analysis/

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https://emleddin.github.io/comp-chem-website/pdf/Analysisguide.pdf

https://amberhub.chpc.utah.edu/nastruct/

https://www.researchgate.net/post/How_to_wrap_protein_dimer-ligand_complex_with_CPPTRAJ_in_AMBER

https://github.com/Amber-MD/cpptraj/blob/master/src/Action_NAstruct.cpp

https://amberhub.chpc.utah.edu/vector/

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https://wires.onlinelibrary.wiley.com/doi/10.1002/wcms.1691

https://www.biorxiv.org/content/biorxiv/early/2021/11/12/2021.11.11.468255/DC1/embed/media-1.pdf?download=true

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https://amberhub.chpc.utah.edu/category/cpptraj/action-commands/page/4/

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https://www.stonybrook.edu/commcms/ureca/feature/_bio/2020/September2020

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https://amberhub.chpc.utah.edu/grid/

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https://www.youtube.com/watch?v=WJ_w-61gEj4

https://www.scribd.com/document/529431450/AmberTools13-cpptraj-ptraj

https://www.blopig.com/blog/2023/03/writing-vector-trajectories-with-cpptraj/

https://www.sciencedirect.com/science/article/pii/S2001037022005335

https://www.cell.com/biophysj/pdf/S0006-3495(19)30335-2.pdf

https://pubs.acs.org/doi/10.1021/acs.jctc.6b00231

https://digibuo.uniovi.es/dspace/bitstream/handle/10651/58009/Manuscript.pdf?sequence=1&isAllowed=n

https://www.mdpi.com/2073-4360/13/19/3311

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http://casea1998.cn/2022/03/01/Amber-%E8%BD%A8%E8%BF%B9%E8%AE%A1%E7%AE%97/

https://amber.tkanai-lab.org/TutorialC0/Amber14.pdf

https://ouci.dntb.gov.ua/en/works/lo0KWeE9/

https://theses.hal.science/tel-04516350v1/file/2023ORLE1044_va.pdf

https://www.science.org/doi/10.1126/science.abm1183

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http://blog.chembiosim.com/amber-cpptraj-tutorial-2/

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https://www.nature.com/articles/s42003-020-01600-1

https://pubs.acs.org/doi/10.1021/jacsau.0c00094

https://www.mdpi.com/2073-4360/13/1/99

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https://signe.teokem.lu.se/ulf/Methods/ekvilibr.html

https://www.almacgroup.com/knowledge/wp-content/uploads/sites/10/2021/01/Journal-of-Physical-Chemistry-B-2019-Reaction-Mechanism-of-Histone-Demethylation-in-%CE%B1KG-dependent-1.pdf

https://www.frontiersin.org/journals/chemistry/articles/10.3389/fchem.2020.602291/full

https://academic.oup.com/nar/article/42/18/11304/2435229

https://digitalcollections.wesleyan.edu/_flysystem/fedora/2023-03/24255-Original%20File.pdf

https://amberhub.chpc.utah.edu/category/cpptraj/page/21/

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https://www.rsc.org/suppdata/d2/sc/d2sc00028h/d2sc00028h1.pdf

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https://amber.utah.edu/AMBER-workshop/London-2015/tutorial1/

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https://amber.utah.edu/PRACE-BioExcel-Seasonal-School-2019/DNA-tutorial/

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