charmm force field atom types - SERP Analysis

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https://www.charmm-gui.org/?doc=lecture&module=molecules_and_topology&lesson=2

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https://docs.silcsbio.com/2020.1/cgenff/cgenff.html

https://www.charmm-gui.org/?doc=lecture&module=molecules_and_topology&lesson=3

https://academiccharmm.org/documentation/version/c47b2/mmff_params/

https://ambermd.org/tutorials/pengfei/gaff4charmm.htm

https://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-unix-html/node25.html

https://pubs.acs.org/doi/10.1021/jp101759q

https://pmc.ncbi.nlm.nih.gov/articles/PMC3228871/

https://docs.lammps.org/Howto_bioFF.html

https://en.wikipedia.org/wiki/CHARMM

https://docs.silcsbio.com/2018.1/cgenff/cgenff.html

https://academiccharmm.org/documentation/version/c38b2/parmfile

https://manual.gromacs.org/current/user-guide/force-fields.html

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https://gromacs.bioexcel.eu/t/missing-atom-types-in-md-simulations/1855

https://forums-academiccharmm.org/viewtopic.php?t=5057

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https://www.osti.gov/servlets/purl/1459308

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https://groups.google.com/g/cp2k/c/RbZ1z0QwrPk

https://pubs.acs.org/doi/10.1021/acs.jcim.3c00860

https://www.bohrium.com/paper-details/automation-of-the-charmm-general-force-field-cgenff-i-bond-perception-and-atom-typing/813270436400857088-3424

https://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-unix-html/node24.html

https://deepblue.lib.umich.edu/bitstream/handle/2027.42/88100/21963_ftp.pdf?sequence=2

https://forums-academiccharmm.org/viewtopic.php?t=7726

http://www.mdtutorials.com/gmx/complex/02_topology.html

https://integrativemodeling.org/2.18.0/doc/ref/classIMP_1_1atom_1_1CHARMMParameters.html

https://ambermd.org/tutorials/advanced/tutorial20/charmm.php

https://www.sciencedirect.com/science/article/pii/S0006349514005724

https://chemrxiv.org/engage/api-gateway/chemrxiv/assets/orp/resource/item/65d2607b66c1381729eee0c4/original/type-label-framework-for-bonded-force-fields-in-lammps.pdf

https://academiccharmm.org/

https://gromacs.bioexcel.eu/t/how-to-combine-param-files-from-charmm-gui-with-the-cgenff-files-for-small-molecules/2218

https://manual.gromacs.org/2025.1/reference-manual/functions/force-field.html

http://www.chem.cmu.edu/courses/09-560/docs/msi/ffbsim/2_Forcefields.html

https://www.researchgate.net/publication/233402917_Automation_of_the_CHARMM_General_Force_Field_CGenFF_II_Assignment_of_bonded_parameters_and_partial_atomic_charges

https://www.rsc.org/suppdata/cc/b5/b503887a/b503887a.pdf

https://onlinelibrary.wiley.com/doi/10.1002/jcc.27245

https://bionano.physics.illinois.edu/CUFIX

http://www.swissparam.ch/

https://pubs.aip.org/aip/jcp/article/153/3/035103/1062771/CHARMM-GUI-supports-the-Amber-force-fields

https://github.com/openmm/openmm/issues/2585

https://webstor.srmist.edu.in/web_assets/srm_mainsite/files/files/AMBERANDCHARMMFORCEFIELDS.pdf

http://www.mmtsb.org/workshops/mmtsb-ctbp_2006/Lecture_pdf/params_alex_jul06a.pdf

https://www.researchgate.net/figure/The-performance-of-the-CHARMm-force-field-for-reproducing-the-relative-experimental_fig4_225092257

http://docs.openmm.org/7.6.0/userguide/application/05_creating_ffs.html

https://www.mdpi.com/1422-0067/18/1/15

https://onlinelibrary.wiley.com/doi/full/10.1002/jcc.24307

https://www.cup.uni-muenchen.de/ch/compchem/tink/mm1.html

https://matsci.org/t/graphene-oxide-with-airebo-charmm/31590

https://www.periodicos.capes.gov.br/index.php/acervo/buscador.html?task=detalhes&id=W1997772366

https://chemrxiv.org/engage/chemrxiv/article-details/6782d5fc6dde43c90825183f

https://lammpstube.com/wp-content/uploads/2019/10/A-Generic-Force-Field-for-Molecular-Simulations.pdf

https://pubs.aip.org/aip/jcp/article/161/24/244901/3328184/A-modular-and-extensible-CHARMM-compatible-model

https://gaussian.com/mm/

https://www.noticias.ucn.cl/wp-content/uploads/2019/07/ff.pdf

https://parmed.github.io/ParmEd/html/api/parmed/parmed.charmm.parameters.html

https://www.ccp5.ac.uk/dl_field/

https://www.rsc.org/suppdata/c8/gc/c8gc03209b/c8gc03209b2.pdf

https://www.sciengine.com/doi/pdf/6487b058473440129466db4f3162f3af

https://old.swissparam.ch/

http://kenno.org/pro/cgenff/program.php

https://www.ub.edu/cbdd/?q=content/parametrize-new-ligands-amber-and-charmm

https://www.scm.com/doc/ForceField/Atom_typing_behaviour.html

https://cgenff.com/about/

https://www.nature.com/articles/s42004-020-0291-4

https://github.com/openmm/openmm/issues/1611

http://bionano.physics.illinois.edu/taxonomy/term/5

https://matsci.org/t/charmm-force-field-weighting-factor/13866

https://academiccharmm.org/documentation/version/c45b2/parmfile

https://europepmc.org/article/pmc/4739825

https://www.cell.com/biophysj/pdf/S0006-3495(22)03215-5.pdf

https://arxiv.org/pdf/2109.14007

https://www.biorxiv.org/content/10.1101/2024.05.06.592691v1.full.pdf

https://mattermodeling.stackexchange.com/questions/11390/effect-of-temperature-on-forcefield-parameters-in-classical-molecular-dynamics-s

https://server.ccl.net/cgi-bin/ccl/message-new?2010%2B11%2B07%2B005

https://sites.google.com/site/pdynamowiki/how-tos/mm-models

https://en.wikipedia.org/wiki/Force_field_(chemistry)

https://academiccharmm.org/documentation/version/c44b2/parmfile

https://utd-ir.tdl.org/bitstreams/9bb2c107-1d2b-41d4-92ab-bf461649ca91/download

https://www.academia.edu/7217292/CHARMM_fluctuating_charge_force_field_for_proteins_I_parameterization_and_application_to_bulk_organic_liquid_simulations?hb-sb-sw=5113342

https://www.afs.enea.it/software/lammps/doc19/html/pair_eff.html

https://www.zhjun-sci.com/abcluster/doc/charmmff.html

https://www.cell.com/biophysj/pdf/S0006-3495(14)02071-2.pdf

https://structbio.vanderbilt.edu/archives/amber-archive/2004/0082.php

https://docs.lammps.org/pair_local_density.html

https://academiccharmm.org/documentation/version/c42b1/charmmrate/

https://www.academiccharmm.org/documentation/version/c46b2/dcm

https://academiccharmm.org/documentation/version/c44b1/pdetail

https://link.springer.com/chapter/10.1007/978-981-96-5366-9_5

https://academiccharmm.org/documentation

https://academiccharmm.org/documentation/version/c41b1/commands